Chipbase 3
WebChIPBase has identified ∼151 187 000 regulatory relationships between ∼171 600 genes and ∼3000 regulators by analyzing ∼55 000 ChIP-seq datasets, which represent a 30-fold expansion. WebAll the binding motifs data are identified by ChIPBase. 6) Select p-value: Pull down the "Adjusted p-value" menu to filter the analysis results. 7) Select GO domain: Pull down the "GO domain" menu to assign examined GO terms to the analysis. 8) Browse results: Click "Submit" to perform the GO analysis based on the selected conditions.
Chipbase 3
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WebNov 18, 2024 · Introduction and use of the 'LncRNA' page from ChIPBase v3.0. The submission page for lncRNA genes bound by DNA-binding proteins or histone modifications is shown with its two informational ... WebSep 2, 2016 · Read more about ChIPBase; SNMNMF Submitted by ChenLiang on Fri, 09/02/2016 - 21:59. It is well known that microRNAs (miRNAs) and genes work cooperatively to form the key part of gene regulatory networks. However, the specific functional roles of most miRNAs and their combinatorial effects in cellular processes are …
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http://rna.sysu.edu.cn/chipbase/browser.php WebChIPBase v3.0 does not provide a way to download the source peak file, you may download peak data in CistromeDB, ReMap2024 and ENCODE. 1. Download regulatory relationships. 2. Download enhancer-gene regulatory pairs. 3. Download motif information. 4. …
WebChipbase. 2,656 likes. Chipbase is a board merchant who specialize in cutting and edging of all board products.
WebOverall, TP53 is the most frequently mutated gene, and its mutations were found in 4796 of 12,538 samples, accounting for 38.25% of all cohorts ( Figure 1A and Table 1). KRAS is also one of the ... ebay instant water heaterWebSep 7, 2024 · ChIPBase built a web-based tool, Co-Expression, to recognize the co-expression patterns between DNA-binding proteins and various types of genes by integrating the gene expression profiles of ∼10,000 tumor samples and ∼9100 normal tissues and cell lines. 1.5.3 LncRNA2Target. ebay instructions to cancel a salehttp://rna.sysu.edu.cn/chipbase/ compare carpet and hard floorshttp://rna.sysu.edu.cn/chipbase/chip_terms.php compare carpet cleaning methodscompare car parking at gatwick north terminalWebSep 17, 2024 · Four major types of interactor symbols were used: (i) miRNA symbols from the miRBase database, (ii) DNA, RNA and protein symbols from the NCBI Gene or Ensembl database, (iii) compound symbols from the PubChem Compound database and (iv) histone modification symbols from the ChIPBase v2.0 database. Notably, each histone … ebay instructions sellingWebIn ChIPBase, all the motifs data are display as PWMs, visualized motif logos and binding sites. How to use: 1) Select factor: Pull down the "Protein factor" menu to get your interested factor. 2) Select experiment and browse: You can filter the selective tables above to get your interested experiment condition. 3) Click " ... ebay in tablets